Liquid-culture protocols for synchronous starvation, growth, dauer formation, and dietary restriction of C. elegans. Jonathan D. Hibshman, Amy K. Webster, and L. Ryan Baugh*. Star Protocols 2021 January.
Population selection and sequencing of C. elegans wild isolates identifies a region on chromosome III affecting starvation resistance. Amy K. Webster, Anthony Hung, Brad T. Moore, Ryan Guzman, James M. Jordan, Rebecca E. W. Kaplan, Jonathan D. Hibshman, Robyn E. Tanny, Daniel E. Cook, Erik Andersen, L. Ryan Baugh*. G3 2019 October.
Insulin/IGF signaling and vitellogenin provisioning mediate intergenerational adaptation to nutrient stress. James M. Jordan, Jonathan D. Hibshman, Amy K. Webster, Rebecca E. W. Kaplan, Abigail Leinroth, Ryan Guzman, Colin S. Maxwell, Rojin Chitrakar, Elizabeth Anne Bowman, Amanda L. Fry, E. Jane Albert Hubbard and L. Ryan Baugh*. Current Biology 2019 July.
Check out the Dispatch describing our work in Current Biology!
Pervasive postive and negative feedback regulation of insulin-like signaling Caenorhabditis elegans. Rebecca E. W. Kaplan¶, Colin S. Maxwell¶, Nicole Kurhanewicz Codd, and L. Ryan Baugh*. GENETICS 2019 January.
Chosen by the GENETICS editors to be one of the January 2019 Highlights.
Neurohormonal signaling via a sulfotransferase antagonizes inslulin-like signaling to regulate a Caenorhabditis elegans stress response. Nicholas O. Burton*, Vivek K. Dwivedi, Kirk B. Burkhart, Rebecca E. W. Kaplan, L. Ryan Baugh, and H. Robert Horvitz*. Nat Commun 2018 December.
Nonselective autophagy reduces mitochondrial content during starvation in Caenorhabditis elegans. Jonathan D. Hibshman, Tess C. Leuthner, Chelsea Shoben, Danielle F. Mello, David R. Sherwood, Joel N. Meyer, and L. Ryan Baugh*. Am J Physiol Cell Physiol 2018 December.
Food perception without ingestion leads to metabolic changes and irreversible developmental arrest in C. C. elegans. Rebecca E. W. Kaplan, Amy K. Webster, Rojin Chitrakar, Joseph A. Dent, and L. Ryan Baugh*. BMC Biology 2018 October.
Transgenerational effects of extended dauer diapause on starvation survival and gene expression plasticity in Caenorhabditis elegans. Amy K. Webster, James M. Jordan, Jonathan D. Hibshman, Rojin Chitrakar and L. Ryan Baugh*. GENETICS 2018 July 26.
Chosen by the GENETICS editors to be one of the September 2018 Highlights.
daf-16/FoxO promotes gluconeogenesis and trehalose synthesis during starvation to support survival. Jonathan D. Hibshman, Alexander E. Doan, Brad T. Moore, Rebecca E.W. Kaplan, Anthony Hung, Amy K. Webster, Dhaval P. Bhatt, Rojin Chitrakar. Matthew D. Hirschey, L. Ryan Baugh*. eLife 2017 October 24.
Genome architecture and evolution of a unichromosomal asexual nematode. Hélène Fradin, Karin Kiontke, Charles Zegar, Michelle Gutwein, Jessica Lucas, Mikhail Kovtun, David Corcoran, L. Ryan Baugh, David H. Fitch*, Fabio Piano* and Kris Gunsalus*. Current Biology 2017 October 9.
Insulin-like signaling to the maternal germline controls progeny response to osmotic stress. Nicholas O. Burton, Tokiko Furuta, Amy K. Webster, Rebecca E. W. Kaplan, L. Ryan Baugh, Swathi Arur and H. Robert Horvitz*. Nat Cell Biol 2017 February 6.
Maternal diet and insulin-like signaling control intergenerational plasticity of progeny size and starvation resistance. Jon D. Hibshman, Anthony Hung and L. Ryan Baugh*. PLoS Genetics 2016 October 26.
dbl-1/TGF-β and daf-12/NHR signaling mediate cell-nonautonomous effects of daf-16/FOXO on starvation-induced developmental arrest. Rebecca E. W. Kaplan§, Yutao Chen§, Brad T. Moore, James M. Jordan, Colin S. Maxwell, Adam J. Schindler, and L. Ryan Baugh*. PLoS Genetics 2015 December 11.
Transgenerational effects of early life starvation on growth, reproduction and stress resistance in C. elegans. Meghan A. Jobson§, James M. Jordan§, Moses A. Sandrof, Jonathan D. Hibshman, Ashley L. Lennox and L. Ryan Baugh*. GENETICS 2015 July 16.
Chosen by the GENETICS editors to be one of the September 2015 Highlights.
Identification of late larval stage developmental checkpoints in Caenorhabditis elegans regulated by insulin/IGF and steroid hormone signaling pathways. Adam J. Schindler, L. Ryan Baugh and David R. Sherwood*. PLoS Genetics 2014 June 19.
BBC Nature News Feature
Science Daily Feature
Pol II docking and pausing at growth and stress genes in C. elegans. Colin S. Maxwell, William S. Kruesi, Leighton J. Core, Nicole Kurhanewicz, Colin T. Waters, Caitlin L. Lewarch, Igor Antoshechkin, John T. Lis, Barbara J. Meyer, and L. Ryan Baugh*. Cell Reports 2014 Feb 13.
Succinylated octopamine ascarosides and a new pathway of biogenic amine metabolism in C. elegans. Alexander B. Artyukhin, Joshua J.Yim, JaganSrinivasan, Yevgeniy Izrayelit, Neelanjan Bose, Stephan H. von Reuss, Yeara Jo, James M. Jordan, L. Ryan Baugh, Micheong Cheong, Paul W. Sternberg, Leon Avery, and Frank C. Schroeder*. J. of Biol. Chem. 2013 June 28.
Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans. Maxwell C, Antoshechkin I, Kurhanewicz N, Belsky J, Baugh LR*. Genome Research 2012 Apr 26. [Epub ahead of print]
Ryan’s thesis work
Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression. Itai Yanai*, L. Ryan Baugh*, Jessica J. Smith, Casey Roehrig, Shai S. Shen-Orr, Julia M. Claggett, Andrew A. Hill, Donna K. Slonim, Eugene L. Brown and Craig P. Hunter. Molecular Systems Biology. 2008 February, 4:163.
Synthetic Lethal Analysis of C. elegans Posterior Patterning Genes Identifies Conserved Genetic Interactions. L. Ryan Baugh, Joanne C. Wen, Andrew A. Hill, Donna K. Slonim, Eugene L. Brown and Craig P. Hunter.Genome Biology. 2005 April, 6(5): R45.
The Homeodomain Protein PAL-1 Specifies a Lineage-Specific Regulatory Network in the C. elegans Embryo. L. Ryan Baugh, Andrew A. Hill, Julia M. Clagget, Kate Hill-Harfe, Joanne C. Wen, Donna K. Slonim, Eugene L. Brown, and Craig P. Hunter. Development. 2005 April, 132(8): 1843-1854.